敲低调控“条码”组合可使巨噬细胞极化由M1转向M2,并加重金黄色葡萄球菌感染负荷
Knockdown of a regulatory barcode shifts macrophage polarization destination from M1 to M2 and increases pathogen burden upon S. aureus infection
摘要
研究整合28种刺激下巨噬细胞的转录组,重建情境化人基因调控网络并定位扰动核心,发现这些网络可聚为13类、M1与M2位于两端,并为各极化状态鉴定出核心调控因子组合。实验显示CEBPB、NFE2L2与BCL3三个因子组成的组合即可将极化去向由M1改为M2:在THP1来源M0细胞中siRNA敲低该组合后,即使暴露于M1刺激,M1表型转化也显著减弱、M2标志物升高;单基因敲低呈类似趋势。该敲低还使巨噬细胞对金黄色葡萄球菌感染高度易感,提示这些因子在免疫应答调控中的重要性。
原文摘要
Macrophages are driven to form distinct functional phenotypes in response to different immunological stimuli, in a process widely referred to as macrophage polarization. Transcriptional regulators that guide macrophage polarization in response to a given trigger remain largely unknown. In this study, we interrogate the programmable landscape in macrophages to find regulatory panels that determine the precise polarization state that a macrophage is driven to. Toward this, we configure an integrative network analysis pipeline that utilizes macrophage transcriptomes in response to 28 distinct stimuli, reconstructs contextualized human gene regulatory networks, and identifies epicenters of perturbations in each case. We find that these contextualized regulatory networks form a spectrum of 13 distinct clusters, with M1 and M2 at the two ends. Using our computational pipeline, we identify combinatorial panels of epicentric regulatory factors (RFs) for each polarization state. We demonstrate that a set of three RFs, that is, CEBPB, NFE2L2, and BCL3, is sufficient to change the polarization destination from M1 to M2. siRNA knockdown of the 3-RF-set in THP1-derived M0 cells, despite exposure to an M1 stimulant, significantly attenuated the shift to M1 phenotype and instead increased the expression of M2 markers. Single knockdown of each RF also showed a similar trend. The siRNA-mediated knockdown of the 3-RF-set rendered the macrophages hyper-susceptible to Staphylococcus aureus infection, demonstrating the importance of these factors in modulating immune responses. Overall, our results provide insights into the transcriptional mechanisms underlying macrophage polarization and identify key RFs that may be targeted to modulate immune responses.
推荐理由:方法学(多刺激转录组网络重建+核心调控因子组合鉴定)扎实,对巨噬细胞极化命运决定有机制新意;但研究对象为感染免疫,未涉及生殖组织或ART场景,与生殖医学核心相关性弱,仅对生殖免疫方向读者有间接参考价值。
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