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陆生植物中GRAS基因差异保留与蛋白互作驱动丛枝菌根共生调控网络的演化

Evolution of the arbuscular mycorrhizal regulatory network through differential GRAS gene retention and protein interaction in land plants

PubMed · CNS/大子刊/四大医学刊(生殖相关) · Proc Natl Acad Sci U S A 综合顶刊 IF 9.4 · 文献 · 2026-10-20
Wu WS, Zhao P, Zeng Z, Li XT, Wu P, Ding Q, Feng XY, Zhang YM, Hu SY, Xue JY 等 14 人
DOI 10.1073/pnas.2607793123 · PMID 42900733 · 原文链接 ↗ · Scholar
综合 28.0 模型 22.0 · deepseek/deepseek-flash · 强度 low 未入选(阈值 60.0) 期刊加权 +6 伦理、法规与指南 多组学与方法学
新颖 62严谨 80影响 8领域相关 3转化 3

摘要

该研究以陆生植物GRAS转录因子家族为对象,通过系统发育分析追踪丛枝菌根共生(AMS)调控网络的演化轨迹:已知共生GRAS成员分布于12个古老分化谱系,非菌根植物中多个谱系出现明显基因丢失,并据此预测3个新的候选谱系。作者在番茄中利用CRISPR-Cas9敲除、真菌定殖与丛枝形态表型分析及突变体根系转录组,证实这3个基因(SRG1–3)各自为AMS发育所必需;结合大规模系统发育基因组学与酵母双杂交、BiFC蛋白互作实验,发现共生GRAS成员组成及互作网络在不同AMS宿主间存在差异。结论认为陆生植物共生GRAS谱系增至15个,该网络在演化中被基因丢失与蛋白互作重连线动态重塑。

原文摘要

Plants rely on an ancient genetic "toolkit" to establish arbuscular mycorrhizal symbiosis (AMS) with fungal partners. However, the symbiotic outcomes vary among AMS hosts, indicating divergence in downstream transcriptional reprogramming after the perception of symbiotic signals. To uncover the cross-species variation of the AMS regulatory network, we traced the evolutionary trajectory of the GRAS gene family, which encodes the major group of transcription factors in AMS regulation. Phylogenetic analysis of the GRAS family across land plants placed known symbiotic GRAS members within 12 anciently diverged lineages, with multiple lineages showing pronounced gene loss in nonmycorrhizal plants. This pattern pointed to three additional GRAS lineages as candidates for AMS regulation. Given that tomato harbors single-copy, AMS-induced genes in these lineages, we selected it for functional validation. CRISPR-Cas9 mutagenesis, combined with detailed phenotyping of fungal colonization and arbuscule morphology, and transcriptome profiling of mutant roots, confirmed that all three tomato genes are individually required for AMS development, designated Symbiosis-Required GRAS (SRG) 1 to 3. Large-scale phylogenomic analysis and protein interaction assays (by yeast two-hybrid and bimolecular fluorescence complementation) further showed that both the repertoire and interaction networks of symbiotic GRAS members vary among AMS hosts. In summary, together with 12 previously characterized lineages, the three SRGs identified in this study bring the total number of GRAS lineages with known symbiotic members across land plants to fifteen. Furthermore, our findings demonstrate that the symbiotic GRAS network has been dynamically reshaped by gene loss and rewiring of protein interactions during land plant evolution.

推荐理由:这是一项扎实的植物—微生物共生演化研究(PNAS,CRISPR验证+互作实验),但主题为植物GRAS转录因子与菌根共生,与生殖医学、辅助生殖及胚胎多组学无实质关联,对ART读者价值极低,不建议作为日常推荐内容。

关键词:GRAS转录因子 · 丛枝菌根共生 · 基因家族演化 · 蛋白互作网络 · CRISPR-Cas9 · 陆生植物

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条目 #400 · 入库 2026-11-08 11:44 · JSON · Journal Article